This is a demonstration environment. It may contain non-accurate test data and should not be used for real-world applications. Data will be deleted regularly.

LOC_001EBXZ.1

Display Name: China/LOC_001EBXZ.1/2024
Q. Xu

Sample details

Collection date
2024
Collection date (lower bound)
2024-01-01
Collection date (upper bound)
2024-12-31
Earliest release date
2025-10-12
Collection country
China
Isolate name
2024CV16-HZ-185

Data use terms

Data use terms
OPEN

Data use terms history

ChangedUserData use terms
2025-12-19 17:53insdc_ingest_userOPEN
Data use terms URL

Authors

Author affiliations
Hangzhou Center for Disease Control and Prevention (Hangzhou Health Supervision Institution), Zhejiang Key Laboratory of Multi-Omics in Infection and Immunity

INSDC

NCBI release date
2025-10-12
NCBI update date
2025-10-12
INSDC accession

Host

Host taxon id
Host name scientific
Homo sapiens

Alignment and QC metrics

Length
7359
Total SNPs
1583
Total inserted nucs
1
Total deleted nucs
9
Total ambiguous nucs
0
Total unknown nucs
0
Total frame shifts
0
Completeness
99.38%
Total stop codons
0

Submission details

Submission ID
PX448926.1
Submitting group
Date submitted
2025-12-19 17:52:57 UTC
Date released
2025-12-19 18:10:01 UTC

Clade

Clade CV-A16
B1c

Genotype

Genotype
CV-A16

Nucleotide mutations

Mutations called relative to the U05876.1 reference

Substitutions

  • T41G
  • C47T
  • T54A
  • A58G
  • T60G
  • C61T
  • T62C
  • A67C
  • T69C
  • C71T
  • G89T
  • C91T
  • T94C
  • A105C
  • C110T
  • C118T
  • A119T
  • A124G
    • Deletions
    101-103, 130-132, 702-704
    Insertions
    ins_7341:T

    Amino acid mutations

    Mutations called relative to the U05876.1 reference

    Substitutions

    2A

  • 2A:K2R
  • 2A:I10V
  • 2A:S66N
  • 2A:S77T
  • 2A:V121I
  • 2A:V137I

    • 2B

  • 2B:T15M
  • 2B:I47V
  • 2B:I57V
  • 2B:A96V

    • 2C

  • 2C:N23S
  • 2C:S61T
  • 2C:I228V
  • 2C:R268K
  • 2C:V303I
  • 2C:Y318S

    • 3A

  • 3A:P3L
  • 3A:R6K
  • 3A:D39E
  • 3A:T49A
  • 3A:I61V

    • 3B

  • 3B:T10A
  • 3B:I15M

    • 3C

  • 3C:V18A
  • 3C:V36I
  • 3C:T46A
  • 3C:I56V
  • 3C:E65D
  • 3C:N93T
  • 3C:S95T
  • 3C:A96G
  • 3C:V103I
  • 3C:S177G

    • 3D

  • 3D:V6M
  • 3D:I17V
  • 3D:N37S
  • 3D:H44T
  • 3D:S45N
  • 3D:R46K
  • 3D:I74V
  • 3D:K75T
  • 3D:E76Q
  • 3D:S93N
  • 3D:Q94K
  • 3D:N106H
  • 3D:T134V
  • 3D:V138T
  • 3D:S139T
  • 3D:L152M
  • 3D:I165L
  • 3D:A190T

    • VP1

  • VP1:G3P
  • VP1:A11T
  • VP1:T13N
  • VP1:S14N
  • VP1:R15Q
  • VP1:G17N
  • VP1:A19S
  • VP1:S22A
  • VP1:E26L
  • VP1:N33E
  • VP1:E36S
  • VP1:L43V
  • VP1:Q59S
  • VP1:E61K
  • VP1:T79A
  • VP1:M119L
  • VP1:A139V
  • VP1:T164K

    • VP2

  • VP2:I32V
  • VP2:K43S
  • VP2:A45T
  • VP2:I126V
  • VP2:D139T
  • VP2:N141S
  • VP2:V149A
  • VP2:N162H
  • VP2:V170I
  • VP2:I215L
  • VP2:A226T
  • VP2:I252V

    • VP3

  • VP3:A33P
  • VP3:R41H
  • VP3:Q59K
  • VP3:S60T
  • VP3:V85A
  • VP3:N93D
  • VP3:G141N
  • VP3:L147I
  • VP3:I169V
  • VP3:K182R
  • VP3:D183A
  • VP3:T193I
  • VP3:S238T
    • Deletions
    None
    Insertions
    None

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