This is a demonstration environment. It may contain non-accurate test data and should not be used for real-world applications. Data will be deleted regularly.

LOC_001DZ32.1

Display Name: China/LOC_001DZ32.1/2024
M. Wang & Z. Tao

Sample details

Collection date
2024
Collection date (lower bound)
2024-01-01
Collection date (upper bound)
2024-12-31
Earliest release date
2025-12-03
Collection country
China
Isolate name
SWG015/SD/CHN/2024/CVA16

Data use terms

Data use terms
OPEN

Data use terms history

ChangedUserData use terms
2025-12-19 17:53insdc_ingest_userOPEN
Data use terms URL

Authors

Author affiliations
Shandong Center for Disease Control and Prevention, Division of EPI

INSDC

NCBI release date
2025-12-03
NCBI update date
2025-12-03
INSDC accession

Host

Host taxon id
Host name scientific
Homo sapiens

Alignment and QC metrics

Length
315
Total SNPs
78
Total inserted nucs
0
Total deleted nucs
0
Total ambiguous nucs
0
Total unknown nucs
0
Total frame shifts
0
Completeness
4.25%
Total stop codons
0

Submission details

Submission ID
PV747877.1
Submitting group
Date submitted
2025-12-19 17:52:57 UTC
Date released
2025-12-19 18:09:01 UTC

Clade

Clade CV-A16
B1c

Genotype

Genotype
CV-A16

Nucleotide mutations

Mutations called relative to the U05876.1 reference

Substitutions

  • C2594T
  • A2595T
  • C2600T
  • C2601G
  • C2604G
  • C2607G
  • T2610A
  • T2613A
  • A2619C
  • C2620A
  • A2621G
  • G2622T
  • T2625C
  • G2626A
  • T2634C
  • A2637T
  • A2640G
  • C2643G
    • Deletions
    None
    Insertions
    None

    Amino acid mutations

    Mutations called relative to the U05876.1 reference

    Substitutions

    VP1

  • VP1:A50V
  • VP1:T52M
  • VP1:Q59S
  • VP1:E61K
  • VP1:T79A
  • VP1:M119L
  • VP1:A139V
    • Deletions
    None
    Insertions
    None

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