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LOC_001DY09.1
Download
Download FASTA
Download metadata TSV
Display Name: USA/LOC_001DY09.1/2024
A. Fall,
O. Abdullah,
J. M. Norton &
H. H. Mostafa
Sample details
Collection date
2024
Collection date (lower bound)
2024-01-01
Collection date (upper bound)
2024-12-31
Earliest release date
2025-05-14
Collection country
USA
Collection subdivision level 1
MD
Isolate name
JH-EV-84/2024
Data use terms
Data use terms
OPEN
✕
Data use terms history
Changed
User
Data use terms
2025-12-19 17:53
insdc_ingest_user
OPEN
Close
(history)
Data use terms URL
https://#TODO-MVP/open
Authors
Author affiliations
Johns Hopkins School of Medicine, Molecular Virology
INSDC
NCBI release date
2025-05-14
NCBI update date
2025-05-14
INSDC accession
PV624841.1
Host
Host taxon id
9606
Host name scientific
Homo sapiens
Alignment and QC metrics
Length
7298
Total SNPs
926
Total inserted nucs
6
Total deleted nucs
25
Total ambiguous nucs
0
Total unknown nucs
1
Total frame shifts
0
Completeness
99.31%
Total stop codons
0
Submission details
Submission ID
PV624841.1
Submitting group
Automated Ingest from INSDC/NCBI Virus by Loculus
Date submitted
2025-12-19 17:52:57 UTC
Date released
2025-12-19 18:09:01 UTC
Clade
Clade EV-D68
A2/D
Genotype
Genotype
EV-D68
Nucleotide mutations
Mutations called relative to the
AY426531.1
reference
Substitutions
T
61
C
C
62
T
A
88
T
T
89
C
C
101
T
T
118
C
C
156
T
T
157
C
A
159
G
C
168
T
T
172
C
C
177
T
T
187
C
C
203
T
A
216
G
A
232
T
T
262
C
G
263
A
Show more
Deletions
656-669, 689-692, 701-704, 2806-2808
Insertions
ins_3303:ATCCGG
Amino acid mutations
Mutations called relative to the
AY426531.1
reference
Substitutions
2A
2A:
I
22
T
2A:
V
37
I
2A:
R
67
K
2A:
I
71
V
2A:
V
144
A
2B
2B:
N
23
S
2B:
I
64
V
2C
2C:
N
30
S
2C:
T
34
N
2C:
K
58
S
2C:
R
72
Q
2C:
R
88
K
2C:
V
96
M
2C:
S
98
A
2C:
A
102
T
2C:
I
154
V
2C:
N
273
G
2C:
T
275
A
2C:
V
304
I
2C:
T
317
I
3A
3A:
V
12
I
3A:
A
13
T
3A:
I
68
V
3C
3C:
V
30
I
3C:
Y
31
H
3C:
R
55
K
3C:
C
93
Y
3D
3D:
M
11
V
3D:
V
29
I
3D:
V
88
T
3D:
N
95
S
3D:
E
101
D
3D:
R
132
K
3D:
K
139
R
3D:
I
212
V
3D:
I
261
V
3D:
V
277
I
3D:
I
278
V
3D:
K
307
R
3D:
V
349
L
3D:
I
360
V
VP1
VP1:
S
1
L
VP1:
N
2
E
VP1:
G
6
E
VP1:
V
13
I
VP1:
T
46
S
VP1:
G
76
S
VP1:
K
84
R
VP1:
A
92
T
VP1:
S
95
G
VP1:
A
96
E
VP1:
G
97
R
VP1:
T
98
I
VP1:
H
99
D
VP1:
F
103
Y
VP1:
N
142
S
VP1:
D
144
N
VP1:
M
148
T
VP1:
K
168
E
Show more
VP2
VP2:
H
45
N
VP2:
S
59
A
VP2:
R
67
K
VP2:
S
73
A
VP2:
N
74
E
VP2:
T
76
K
VP2:
D
136
N
VP2:
R
151
E
VP2:
I
167
L
VP2:
V
195
A
VP2:
M
222
V
VP2:
V
225
M
VP2:
T
247
A
VP3
VP3:
I
40
V
VP3:
M
46
V
VP3:
D
59
E
VP3:
N
62
D
VP3:
E
65
Q
VP3:
R
68
K
VP3:
Q
74
L
VP3:
A
75
T
VP3:
L
77
V
VP3:
I
153
V
VP3:
I
163
V
VP3:
S
180
N
VP3:
S
204
N
VP3:
D
208
N
VP3:
I
216
V
Deletions
VP1:140
Insertions
ins_VP1:306:RL
Nucleotide sequence
Aligned nucleotide sequence
Aligned amino acid sequences
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