This is a demonstration environment. It may contain non-accurate test data and should not be used for real-world applications. Data will be deleted regularly.

LOC_001DG6D.1

Display Name: China/LOC_001DG6D.1/2024
Y. Y. Zhou, X. J. Zhang, J. Y. Lin, Y. Zhu, R. J. Lu, W. J. Tan & J. Shen

Sample details

Collection date
2024
Collection date (lower bound)
2024-01-01
Collection date (upper bound)
2024-12-31
Earliest release date
2025-01-11
Collection country
China
Collection subdivision level 1
Shanghai
Isolate name
SH2024-456

Data use terms

Data use terms
OPEN

Data use terms history

ChangedUserData use terms
2025-12-19 17:53insdc_ingest_userOPEN
Data use terms URL

Authors

Author affiliations
Children's Hospital of Fudan University, Infectious Disease Department

INSDC

NCBI release date
2025-01-11
NCBI update date
2025-01-11
INSDC accession

Host

Host taxon id
Host name scientific
Homo sapiens

Alignment and QC metrics

Length
1144
Total SNPs
168
Total inserted nucs
0
Total deleted nucs
0
Total ambiguous nucs
0
Total unknown nucs
0
Total frame shifts
0
Completeness
15.53%
Total stop codons
0

Submission details

Submission ID
PQ826418.1
Submitting group
Date submitted
2025-12-19 17:52:57 UTC
Date released
2025-12-19 18:09:01 UTC

Clade

Clade EV-D68
B3

Genotype

Genotype
EV-D68

Nucleotide mutations

Mutations called relative to the AY426531.1 reference

Substitutions

  • C2238T
  • T2244C
  • T2247C
  • A2259C
  • C2262T
  • C2280T
  • G2298A
  • T2304A
  • T2307C
  • T2310A
  • T2316C
  • A2319G
  • A2325G
  • C2346T
  • T2349C
  • T2359C
  • T2370C
  • T2373C
    • Deletions
    None
    Insertions
    None

    Amino acid mutations

    Mutations called relative to the AY426531.1 reference

    Substitutions

    VP1

  • VP1:S1I
  • VP1:N2E
  • VP1:V13I
  • VP1:G76S
  • VP1:K84R
  • VP1:N90D
  • VP1:A92T
  • VP1:S95T
  • VP1:G97Q
  • VP1:H99D
  • VP1:K110R
  • VP1:N142S
  • VP1:D144N
  • VP1:S145N
  • VP1:M148V
  • VP1:K168E
  • VP1:E169K
  • VP1:G178S
    • Deletions
    None
    Insertions
    None

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