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LOC_001DDC4.1
Download
Download FASTA
Download metadata TSV
Display Name: France/LOC_001DDC4.1/2024-09-05
M. Jeannoel,
D. Falcon,
E. Groscarret,
E. Calfapietra &
I. Schuffenecker
Sample details
Collection date
2024-09-05
Collection date (lower bound)
2024-09-05
Collection date (upper bound)
2024-09-05
Earliest release date
2025-06-01
Collection country
France
Collection subdivision level 1
Lille
Isolate name
EVD68_024145244301_24E1226_LIL_FRA24
Data use terms
Data use terms
OPEN
✕
Data use terms history
Changed
User
Data use terms
2025-12-19 17:53
insdc_ingest_user
OPEN
Close
(history)
Data use terms URL
https://#TODO-MVP/open
Authors
Author affiliations
Centre National de Reference des Enterovirus et Parechovirus, CHU Clermont-Ferrand, virologie
INSDC
NCBI release date
2025-06-01
NCBI update date
2025-06-01
INSDC accession
PQ612499.1
Host
Host taxon id
9606
Host name scientific
Homo sapiens
Alignment and QC metrics
Length
7340
Total SNPs
909
Total inserted nucs
11
Total deleted nucs
37
Total ambiguous nucs
0
Total unknown nucs
0
Total frame shifts
0
Completeness
99.99%
Total stop codons
0
Submission details
Submission ID
PQ612499.1
Submitting group
Automated Ingest from INSDC/NCBI Virus by Loculus
Date submitted
2025-12-19 17:52:57 UTC
Date released
2025-12-19 18:09:01 UTC
Clade
Clade EV-D68
B3
Genotype
Genotype
EV-D68
Nucleotide mutations
Mutations called relative to the
AY426531.1
reference
Substitutions
T
11
C
C
12
T
T
61
C
C
62
T
A
88
T
T
89
C
C
95
T
C
101
T
C
106
T
C
122
T
A
126
G
A
140
G
T
172
C
T
187
C
G
197
A
T
222
C
A
232
T
T
262
C
Show more
Deletions
619, 691-725, 7337
Insertions
ins_28:C, ins_7367:AAAAAAAAAA
Amino acid mutations
Mutations called relative to the
AY426531.1
reference
Substitutions
2A
2A:
I
22
T
2A:
V
37
I
2A:
R
65
K
2A:
N
84
S
2A:
A
99
V
2A:
V
144
A
2B
2B:
I
64
V
2C
2C:
K
58
N
2C:
R
72
Q
2C:
S
98
A
2C:
A
102
M
2C:
N
273
G
2C:
T
275
A
2C:
T
277
V
2C:
V
304
I
3A
3A:
I
8
V
3A:
A
13
T
3A:
V
53
L
3C
3C:
I
46
T
3C:
N
50
D
3C:
C
93
Y
3D
3D:
N
6
S
3D:
M
11
V
3D:
S
41
P
3D:
N
95
S
3D:
E
101
D
3D:
Q
130
H
3D:
T
138
S
3D:
I
212
M
3D:
V
277
I
3D:
I
278
V
3D:
K
307
R
3D:
I
360
V
3D:
T
442
A
3D:
K
452
R
VP1
VP1:
S
1
I
VP1:
N
2
E
VP1:
V
13
I
VP1:
G
76
S
VP1:
K
84
R
VP1:
N
90
D
VP1:
A
92
T
VP1:
S
95
T
VP1:
G
97
R
VP1:
H
99
D
VP1:
K
110
R
VP1:
N
142
S
VP1:
D
144
N
VP1:
S
145
N
VP1:
M
148
V
VP1:
K
168
E
VP1:
E
169
K
VP1:
N
218
T
Show more
VP2
VP2:
S
59
A
VP2:
S
73
A
VP2:
N
74
T
VP2:
Y
98
H
VP2:
D
136
N
VP2:
N
144
D
VP2:
R
151
A
VP2:
I
167
L
VP2:
V
195
A
VP2:
V
211
I
VP2:
V
225
M
VP3
VP3:
I
40
V
VP3:
M
46
V
VP3:
D
59
E
VP3:
G
60
S
VP3:
N
62
V
VP3:
R
68
K
VP3:
V
73
A
VP3:
Q
74
L
VP3:
A
75
T
VP3:
L
77
V
VP3:
S
180
N
VP4
VP4:
I
18
V
Deletions
None
Insertions
None
Nucleotide sequence
Aligned nucleotide sequence
Aligned amino acid sequences
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