This is a demonstration environment. It may contain non-accurate test data and should not be used for real-world applications. Data will be deleted regularly.

LOC_001D9F2.1

Display Name: Italy/LOC_001D9F2.1/2024
E. Pariani, A. Piralla, L. Pellegrinelli, F. Giardina, V. N. Porrello, G. Romano, C. Galli, L. Sandri, G. Ferrari, S. Binda, L. Vezzosi, G. Del Castillo, S. Buoro, D. Cereda & F. Baldanti

Sample details

Collection date
2024
Collection date (lower bound)
2024-01-01
Collection date (upper bound)
2024-10-13
Earliest release date
2024-10-13
Collection country
Italy
Isolate name
EV-D68/ITA/MI-4006/2024

Data use terms

Data use terms
OPEN

Data use terms history

ChangedUserData use terms
2025-12-19 17:53insdc_ingest_userOPEN
Data use terms URL

Authors

Author affiliations
Fondazione IRCCS Policlinico San Matteo, Microbiology and Virology Department

INSDC

NCBI release date
2024-10-13
NCBI update date
2024-10-13
INSDC accession

Host

Host taxon id
Host name scientific
Homo sapiens

Alignment and QC metrics

Length
6527
Total SNPs
872
Total inserted nucs
6
Total deleted nucs
3
Total ambiguous nucs
5
Total unknown nucs
0
Total frame shifts
0
Completeness
88.49%
Total stop codons
0

Submission details

Submission ID
PQ426648.1
Submitting group
Date submitted
2025-12-19 17:52:57 UTC
Date released
2025-12-19 18:09:01 UTC

Clade

Clade EV-D68
A2/D

Genotype

Genotype
EV-D68

Nucleotide mutations

Mutations called relative to the AY426531.1 reference

Substitutions

  • G756A
  • T768C
  • T780C
  • C801T
  • T807C
  • G834A
  • T837C
  • A846G
  • C855T
  • G861A
  • C867T
  • G876A
  • T879C
  • C891T
  • A915G
  • A927T
  • T942C
  • C948T
    • Deletions
    2806-2808
    Insertions
    ins_3303:ATCCGG

    Amino acid mutations

    Mutations called relative to the AY426531.1 reference

    Substitutions

    2A

  • 2A:I22T
  • 2A:V37I
  • 2A:R67K
  • 2A:I71V
  • 2A:N136S
  • 2A:V144A

    • 2B

  • 2B:N23S
  • 2B:I64V

    • 2C

  • 2C:N30S
  • 2C:T34N
  • 2C:K58S
  • 2C:R72Q
  • 2C:R88K
  • 2C:V96M
  • 2C:S98A
  • 2C:A102T
  • 2C:I154V
  • 2C:N273D
  • 2C:T275A
  • 2C:V304I
  • 2C:T317I

    • 3A

  • 3A:V12I
  • 3A:A13T
  • 3A:I68V

    • 3B

  • 3B:P7S

    • 3C

  • 3C:V30I
  • 3C:Y31H
  • 3C:R55K
  • 3C:C93Y

    • 3D

  • 3D:N6S
  • 3D:M11V
  • 3D:V29I
  • 3D:V88T
  • 3D:N95S
  • 3D:E101D
  • 3D:R132K
  • 3D:K139R
  • 3D:I212V
  • 3D:I261V
  • 3D:V277I
  • 3D:I278V
  • 3D:K307R
  • 3D:H332Y
  • 3D:V349L
  • 3D:I360V

    • VP1

  • VP1:S1L
  • VP1:N2E
  • VP1:G6E
  • VP1:V13I
  • VP1:T46S
  • VP1:G76S
  • VP1:K84R
  • VP1:A92T
  • VP1:S95G
  • VP1:A96E
  • VP1:G97R
  • VP1:T98I
  • VP1:H99D
  • VP1:F103Y
  • VP1:N142S
  • VP1:D144N
  • VP1:M148T
  • VP1:K168E

    • VP2

  • VP2:S59A
  • VP2:R67K
  • VP2:S73A
  • VP2:N74E
  • VP2:T76K
  • VP2:D136N
  • VP2:R151E
  • VP2:I167L
  • VP2:V195A
  • VP2:M222V
  • VP2:V225M
  • VP2:T247A

    • VP3

  • VP3:I40V
  • VP3:M46V
  • VP3:D59E
  • VP3:N62D
  • VP3:E65Q
  • VP3:R68K
  • VP3:Q74L
  • VP3:A75T
  • VP3:L77V
  • VP3:I153V
  • VP3:I163V
  • VP3:S180N
  • VP3:S204N
  • VP3:D208N
  • VP3:I216V
    • Deletions
    VP1:140
    Insertions
    ins_VP1:306:RL

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