This is a demonstration environment. It may contain non-accurate test data and should not be used for real-world applications. Data will be deleted regularly.

LOC_001CYQW.1

Display Name: Israel/LOC_001CYQW.1/2024-01-07
M. Weil

Sample details

Collection date
2024-01-07
Collection date (lower bound)
2024-01-07
Collection date (upper bound)
2024-01-07
Earliest release date
2024-06-19
Collection country
Israel
Isolate name
54

Data use terms

Data use terms
OPEN

Data use terms history

ChangedUserData use terms
2025-12-19 17:53insdc_ingest_userOPEN
Data use terms URL

Authors

Author affiliations
Israel Ministry Of Health, ICDC

INSDC

NCBI release date
2024-06-19
NCBI update date
2024-06-19
INSDC accession

Host

Host taxon id
Host name scientific
Homo sapiens

Alignment and QC metrics

Length
172
Total SNPs
30
Total inserted nucs
0
Total deleted nucs
0
Total ambiguous nucs
0
Total unknown nucs
0
Total frame shifts
0
Completeness
2.32%
Total stop codons
0

Submission details

Submission ID
PP887648.1
Submitting group
Date submitted
2025-12-19 17:52:57 UTC
Date released
2025-12-19 18:08:01 UTC

Clade

Clade EV-A71
C1-like

Genotype

Genotype
EV-A71

Nucleotide mutations

Mutations called relative to the U22521.1 reference

Substitutions

  • A2696G
  • A2699G
  • C2702G
  • A2705G
  • T2708C
  • T2720C
  • T2723C
  • A2730G
  • C2738A
  • C2741A
  • T2744C
  • G2747A
  • G2753T
  • C2759T
  • A2777T
  • C2780T
  • T2786C
  • G2789A
    • Deletions
    None
    Insertions
    None

    Amino acid mutations

    Mutations called relative to the U22521.1 reference

    Substitutions

    VP1

  • VP1:K98E
    • Deletions
    None
    Insertions
    None

    Report an issue with this sequence or metadata

    Create GitHub issue